Just so you don't get in a fight with the taxis getting off the boat to Bohol...
When we got to Bohol, we wanted to go to Alona Beach and every taxi lined up in front of the pier insisted on charging us two times the meter to go there for the return trip. Now, we got ripped off in nearly every taxi ride in the Philippines simply because we were foreigners and we thought this was another ludicrous ploy. So we took a cab into the city just to get away from the pier and the same rates applied...so I guess that's what they charge. It ended up costing about $40 just to get there...which in the Philippines is insane!
Leaving Alona Beach, however, we were able to work the system. We booked a day long tour in a private car for $100 for 2 people, but rather than simply taking us to the Chocolate Hills and other sites and then back to Alona Beach, we had them take us first to the boat pier to buy our tickets, had our luggage in the car the whole day, and at the end of the day deposited us at the ferry terminal at precisely the correct time. I'd highly recommend this approach to others! If you do book a private tour in your own car (and the locals seem to pressure foreigners with money to do this), know that you can create the route you want.