A visit to San Clemente is quite literally a trip through the history of Rome. Entering into the church, the new basilica is seen, with additions ranging from the 12th century to the 18th century. The apse is particularly beautiful, with a golden mosaic representing the tree of life. A quick glimpse around the interior, however, displays several unusual features. For one thing, the columns lining the main aisle aren't identical to one another. The different columns are the result of an early Christian construction practice of removing ancient columns from Roman structures and placing them in churches. In addition, looking at the bottom of the walls on the edge of the building reveals strange, short, filled-in arches. These arches, in fact, hint at the site's fascinating past - the arches are the remains of the upper level of an ancient basilica, still peeking up into the current church.
Paying a small fee will gain you entrance into that lower church, which dates to the 4th century. The original church is a little difficult to recreate mentally, as much of the basilica, such as the spaces in between columns, has been filled in for support. However, ancient frescoes and altars remain, giving a glimpse into one of the first churches built in Rome. (If you're wondering why the church was built over, it was largely destroyed by the Normans, and the decision was made to simply fill in the old one and build on top of it.)
Walk a little farther through the musty underground corridors and you'll find yourself in an ancient Roman home. Because of the placement of the church, it is believed that this home once served as a secret place of worship for Christians, back before Christianity was legalized. The home is also believed to have been partially destroyed during Nero's infamous fire (which seems likely, given its close proximity to the Colosseum).
Continue on and you can peek into a one-room pagan shrine. As a remnant of the testosterone-driven Cult of Mithras, the room successfully brings the building full circle from its ancient pagan roots to its modern Christian function.
Add in a glimpse of the ancient Roman sewer system (that's the almost omnipresent rushing water that you're hearing) and a few creepy staircases leading to now-empty crypts and San Clemente provides an often-overlooked vision of Roman history. Some of the more ancient spots can be difficult to interpret, but it’s definitely worth a visit if you have the time and a good guidebook.